PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319266
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 608aa    MW: 63946.1 Da    PI: 9.133
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319266genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.95e-402003373116
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 
                    ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai++ tgt++++a+++  + s +ss+s+ s++         
  MDP0000319266 200 VAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFStLNISLRSSGSTLSAPpsksaphsf 295
                    689*****************************************************************9998888888888866666677778999 PP

            TCP  89 ........................kaaksaakskksqksaasalnlakesra 116
                                            +          +q++++++++ +++ ++
  MDP0000319266 296 pgalalahhpxydegfahsgllgfH----------QQHQQQQHQQHHHQPHQ 337
                    9999999999998765544444331..........33333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-39204338IPR005333Transcription factor, TCP
PROSITE profilePS5136927.342205259IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MLTCAVSLLP XLPSTGTNWT HPPTPSPSDI XNLPFAPEGI NVSVKKADSY HSFHQTPRLE  60
GGGRRAEXGG RRTEXGEIFL RRXRGRRRTP LSVGSISIQA GLTTTSHSTP PPPPTSAPSS  120
SSFSSSSSTS SPSSTSTSAA PPPHLVDASL AIATRSDPHP PTRPASLLDS AKNNQTQQQL  180
TISPATTSPP SAXAAPATQV AKRSTKDRHT KVEGRGRRIR MPATCAARVF QLTRELGHKS  240
DGETIEWLLQ QAEHAIIATT GTGTIPANFS TLNISLRSSG STLSAPPSKS APHSFPGALA  300
LAHHPXYDEG FAHSGLLGFH QQHQQQQHQQ HHHQPHQSPL MTADQIAEAL PSGGGDSAGG  360
GGGESTENYM RKRFREDLFK DDNQGQGESG SGDGGGSPSR NKAFKGASSG GLQXPKQQQQ  420
GAEVGSSGVL RPSSILPATA MWAVAPAPTS GAGNTFWMLP VTAGPGVPSM AXATFGAGPS  480
EAAQMWTFPS STASHGSTLQ APMHFMPRFN LPSSLEFQQA AAGGRGSPLQ LGSMLMQQPP  540
SQHLGLGVSD SNLGMLAALN AYSRGGLNMN SDQHQQNHHH PLDHHHQEQQ QHQPQTXDSG  600
DEAPNSSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.286570.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365311.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP8-like
TrEMBLD9ZJC70.0D9ZJC7_MALDO; TCP domain class transcription factor
STRINGVIT_12s0035g00690.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-72TCP family protein